YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39953467, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIVLEITDT FLWDYMYAFV APATAPPYDY PNLSNGTAVA HNGWEYKPTT ALFSLEPSQA  60
   61 AYQSALPRDN IYRQGISLFL IYWIFGVLVY YIFATASYLF IFDKKQMEHP KFLKNQIKLE 120
  121 MIQANKAFPI MALYTVPMIL LEIRGYSKLY DSADEAPAWW YNYIQFPLFL VFTDFCIYWI 180
  181 HRWLHAPIFY KRLHKPHHKW IMPTPFASHA FHPLDGYAQS FPYHLFPFIF PLQKVAYIGL 240
  241 FVFINIWTIL IHDGEYVANN PIINGAACHA VHHFAFNYNY GQYTTLWDRL GGSYREPDAD 300
  301 LFDLKAKMSK EQWNKQAKEM ENLVQQIEGE DDRVYGEISD KKTR

Type	Start	End	Confidence
Non-Cytoplasmic	1	78	0.67
Transmembrane Helix	79	102	0.91
Cytoplasmic	103	121	0.78
Transmembrane Helix	122	141	0.77
Non-Cytoplasmic	142	162	0.79
Transmembrane Helix	163	181	0.94
Cytoplasmic	182	199	0.78
Transmembrane Helix	200	214	0.69
Non-Cytoplasmic	215	229	0.58
Transmembrane Helix	230	251	0.77
Cytoplasmic	252	344	0.77