YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7487052
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.85
Transmembrane Helix	14	37	0.90
Cytoplasmic	38	57	0.79
Transmembrane Helix	58	77	0.80
Non-Cytoplasmic	78	153	0.96
Transmembrane Helix	154	176	0.93
Cytoplasmic	177	217	0.96
Transmembrane Helix	218	235	0.54
Non-Cytoplasmic	236	239	0.45
Transmembrane Helix	240	261	0.50
Cytoplasmic	262	272	0.88
Transmembrane Helix	273	293	0.95
Non-Cytoplasmic	294	300	0.81
Transmembrane Helix	301	322	0.91
Cytoplasmic	323	358	0.91
Transmembrane Helix	359	378	0.95
Non-Cytoplasmic	379	397	0.85
Transmembrane Helix	398	421	0.83
Cytoplasmic	422	570	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIKERSLEE TPTWAVAVVC FVLLFISIMI EYFLHFIGHW FKKKHKKALS EALEKVKAEL  60
   61 MLLGFISLLL VVLQTPVSEI CIPRNIAATW HPCSNHQEIA KYGKDYIDDG RKILEDFDSN 120
  121 DFYSPRRNLA TKGYDKCAEK GKVALVSAYG IHQLHIFIFV LAVFHVLYCI ITYALGKTKM 180
  181 KKWKSWERET KTIEYQYAND PERFRFARDT SFGRRHLNIW SKSTFTLWIF FGSVTKVDYL 240
  241 TLRHGFIMAH LPAGSAARFD FQKYIERSLE QDFTVVVGIS PLIWCIAVLF ILTNTHGWDS 300
  301 YLWLPFLPLI VILIVGAKLQ MIISKLGLRI QEKGDVVKGA PVVEPGDDLF WFGRPRFILF 360
  361 LIHLVLFTNA FQLAFFVWST YEFTLKNCFH HKTEDIAIRI TMGVLIQVLC SYITLPLYAL 420
  421 VTQMGTSMRP TIFNDRVANA LKKWHHTAKK QTKHGHSGSN TPHSSRPTTP THGMSPVHLL 480
  481 HNYNNRSLDQ QTSFTASPSP PRFSDYSGQG HGHQHFFDPE SQNHSYQREI TDSEFSNSHH 540
  541 PQVDMASPVR EEKEIVEHVK VDLSEFTFKK