YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11141541
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFVFNFVFWL AGGVILGVAL WLRHDPQTTN LLYLELGDKP APNTFYVGIY ILIAVGAVMM  60
   61 FVGFLGCYGA IQESQCLLGT FFTCLVILFA CEVAAGIWGF VNKDQIAKDV KQFYDQALQQ 120
  121 AVVDDDANNA KAVVKTFHET LNCCGSSTLS ALTTSMLKNN LCPSGSSIIS NLFKEDCHQK 180
  181 IDELFSGKLY LIGIAAIVVA VIMIFEMILS M

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.66
Transmembrane Helix	6	24	0.94
Cytoplasmic	25	44	0.67
Transmembrane Helix	45	68	0.91
Non-Cytoplasmic	69	76	0.59
Transmembrane Helix	77	101	0.89
Cytoplasmic	102	188	0.71
Transmembrane Helix	189	209	0.94
Non-Cytoplasmic	210	211	0.65