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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|297829, gi|482661
Protein type: Globular with Signal Peptide
Type Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVKKTYGFR KSKISKTLCG AVLGTVAAVS VAGQKVFADE TTTTSDVDTK VVGTQTGNPA  60
   61 TNLPERQGSA SKEAEQSQNQ AGETNGSIPV EVPKTDLDQA AKDAKSAGVN VVQDADVNKG 120
  121 TVKTAEEAVQ KETEIKEDYT KQAEDIKKTT DQYKSDVVAH EAEVAKIKAK NQATKEQYEK 180
  181 DMAAHKAEVE RINAANAASK TAYEAKLAQY QADLAAVQKT NAANQAAYQK ALAAYQAELK 240
  241 RVQEANAAAK AAYDTAVAAN NAKNTEIAAA NEEIRKRMAT AKAEYETKLA QYQAELKRVQ 300
  301 EANAANEADY QAKLTAYQTE LARVQKANAD AKAAYEAAVA ANNAKNAALT AENTAIKQRN 360
  361 ENAKATYEAA LKQYEADLAA VKKANAANEA DYQAKLTAYQ TELARVQKAN ADAKAAYEAA 420
  421 VAANNAANAA LTAENTAIKK RNADAKADYE AKLAKYQADL AKYQKDLDDY PVKLKDMQDE 480
  481 QASIKRRLAE LEKHKNEDGN LTEPSAQNLV YDLEPNANLS LTTDGKFLKA SAVDDAFSKS 540
  541 TSKAKYVQKI LQLDDLDITN LEQSNDVASS MELYGNFGDK AGWSTTVSNN SQVKWGSVLL 600
  601 ERGQSATATY TNLQNSYYNG KKISKIVYKY TVDPKSKFQG QKVWLGIFTD PTLGVFASAY 660
  661 TGQVEKNTSI FIKNEFTFYD EDGKPINFDN ALLSVASLNR EHNSIEMAKD YSGKFVKISG 720
  721 SSIGEKNGMI YATDTLNFKQ GEGGSRWTMY KNSQAGSGWD SSDAPNSWYG AGAIKMSGPN 780
  781 NHVTVGATSA TNVMPVSDMP VVPGKDNTDG KKPNIWYSLN GKIRAVNVPK VTKEKPTPPV 840
  841 KPTAPTKPTY ETEKPLKPAP VAPNYEKEPT PPTRTPDQRE PNKPTPPTYE TEKPLEPAPV 900
  901 EPSYEAEPTP PTRTPDQQSQ INPHRQTYET EKPLEPAPVE PSYEAEPTPP TPTPDQPEPN 960
  961 KPVEPTYEVI PTPPTDPVYQ DLPTPPSVPT VHFHYFKLAV QPQVNKEIRN NNDVNIDRTL1020
 1021 VAKQSVVKFQ LKTADLPAGR DETTSFVLVD PLPSGYQFNP EATKAASPGF DVTYDNATNT1080
 1081 VTFKATAATL ATFNADLTKS VATVYPTVVG QVLNDGATYK NNFTLTVNDA YGIKSNVVRV1140
 1141 TTLVNQMIQI TQIIITLATK VIKMKMALLL MGKDLLAGST NYYELTWDLD HIKRPSSADT1200
 1201 IQRIYYVDDY PEEDDLKIDD QDLDEDYRML MVMKLLVLVW IIILVLKQPL KKLEMFFLRA1260
 1261 GIRLKGAFQI FRADNPREFY DTYVKTGIDL KIVSPMVVKT MGQTGGSYEN QAYQIDFGNG1320
 1321 YRSNIVINKW LPKINPKKDM TLTLDPADTN KCVDGQTIPL NTVFNYRLIG WHLSLQITQK1380
 1381 NSLNTISMMI MIKQEITILV SIKFLAKVDI TFKDGSIIKS GAELTQYTTA EVDTAKGAIT1440
 1441 IKFKEAFLRS VSIDSAFQAE SYIQMKRIAV GTFENTYINT VNGVTYSSNT VKTTTPEDPT1500
 1501 DPTDPQDPSS PRTSTVINYK PQSTAYQPSS VQETLPNTGV TNQCLYAFTW YYWLSY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle