YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7488701, gi\|5...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.79
Transmembrane Helix	44	68	0.83
Non-Cytoplasmic	69	79	0.67
Transmembrane Helix	80	97	0.55
Cytoplasmic	98	116	0.51
Transmembrane Helix	117	131	0.36
Non-Cytoplasmic	132	140	0.53
Transmembrane Helix	141	161	0.84
Cytoplasmic	162	176	0.60
Transmembrane Helix	177	196	0.89
Non-Cytoplasmic	197	214	0.74
Transmembrane Helix	215	238	0.82
Cytoplasmic	239	251	0.73
Transmembrane Helix	252	275	0.86
Non-Cytoplasmic	276	283	0.75
Transmembrane Helix	284	306	0.89
Cytoplasmic	307	314	0.77
Transmembrane Helix	315	335	0.90
Non-Cytoplasmic	336	349	0.74
Transmembrane Helix	350	382	0.61
Cytoplasmic	383	389	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYIGTHGVA ALHRYKYSGV DHSYVAKYVL QPFWSRFVNF FPLWMPPNMI TLMGFMFLLL  60
   61 SALLGYIYSP QLDTAPPRWV HFAHGLLLFL YQTFDAVDGK QARRTNSSSP LGELFDHGCD 120
  121 ALACTFEALA FGSTAMCGRT TFWWWLISAI TFYGATWEHY FTNTLILPVI NGPTEGLMII 180
  181 YICHFFTAIV GAEWWVQQFG KSLPFLNWLP YLGGIPTFKA ILCLMIAFGV TPTVTCNVSN 240
  241 VYKVVKGKNG SMPLALAMLY PFVVLVGGVL VWDYLSPSDI MGKYPHLVVI GTGLTFGYLV 300
  301 GRMILAHLCD EPKGLKTGMC MSLMFLPLAI ANVLASRLND GVPLVDERLV LLGYCAFSVT 360
  361 LYLHFATSVI HEITNALGIY CFRITRKEA