YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7494420
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDHYINILL FALPLNILVY NQRNYYITRT PKATTRTLCE CELYAPATYD DDPQMKEVMD  60
   61 NFNRQTQQRF HEYDERMKTT RQKCKDQFDK EIQKIILKDK LEKELMDKFA TLQTDIQNDA 120
  121 IPTCICEKSL ADKVEKTCLR CGSVFGGGIT PGWGLISGLG YVGWTNYITE IAIQKGIEAG 180
  181 VKAGIQELKG FAGLSRLINF SEIKNLINHT NYFKEMTYVS FLQDANKTHC SARPTSKEIF 240
  241 CNFVSHNGES ALSKRAAGIA DYAADMAKIT EEGVLEEGAS ATSSLTTAII ASIIAIVVII 300
  301 LIMIIIYLVL RYLRKKKMKK KLEYIKLLKE

Type	Start	End	Confidence
Non-Cytoplasmic	1	287	0.76
Transmembrane Helix	288	310	0.96
Cytoplasmic	311	330	0.96