YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2190986
Protein type:	Globular with Signal Peptide
Type Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVCESKAVV QQQLQQHLQQ QAAAAVVAVA QQQQAQAQAQ AQAQAQAQQQ QQAPQVVVPM  60
   61 TPQHLTPQQQ QQSTQSIADY LAQLLKDRKQ LAAFPNVFTH VERLLDEEIA RVRASLFQIN 120
  121 GVKKEPLTLP EPEGSVVTMN EKVYVPVREH PDFNFVGRIL GPRGMTAKQL EQETGCKIMV 180
  181 RGKGSMRDKK KEDANRGKPN WEHLSDDLHV LITVEDTENR ATVKLAQAVA EVQKLLVPQA 240
  241 EGEDELKKRQ LMELAIINGT YRDTTAKSVA VCDEEWRRLV AASDSRLLTS TGLPGLAAQI 300
  301 RAPAAAPLGA PLILNPRMTV PTTAASILSA QAAPTAAFDQ TGHGMIFAPY DYANYAALAG 360
  361 NPLLTEYADH SVGAIKQQRR LATNREHPYQ RATVGVPAKP AGFIEIQ

Type	Start	End	Confidence
Signal Peptide	1	37	0.51
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	407	0.99