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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2149093
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGYQQGGGH YNDGYGHQEH GDSFYQDEHG QAYYDHDYGD GYYDRSGYYG PDGNHNQQEG  60
   61 GYYDAGQPHD DYYGDHYYDQ GNGQQGYDNR GRRRGDSEED SETFSDFTMR SETARAADMD 120
  121 YYGRGDERYN SYADSQYGGR GYGYRPPSSQ ISYGANRSSG ASTPVYGMDY GNALPAGQRS 180
  181 REPYPAWASD GQVPVSKEEI EDIFLDLVNK FGFQRDSMRN MYDHLMTMLD SRASRMTPNQ 240
  241 ALLSLHADYI GGDNANYRRW YFAAHLDLDD AVGFANMKLG KADRKTRKAR KAAKKAAQQN 300
  301 PENVEETLEA LEGDNSLEAA EYRWKTRMNK MSQHDRVRQL ALFLLCWGEA NQVRFLPECL 360
  361 CFIFKCADDY YNSPECQNRV EPVEEFTYLN EIITPLYQYC RDQGYEIVDG KYVRRERDHN 420
  421 QIIVSDMNQL FWYPEGIERI ALEDKTRLVD IPPAERWTKL KDVVWKKAFF KTYKETRSWF 480
  481 HMITNFNRIW VIHLGAFWFF TAFNAQSLYT DNYQQQVNNK PPGYRIWSAV GFGGALSSFI 540
  541 QIAATICEWM YVPRRWAGAQ HLTKRLMFLI LVFVINLAPG VFVFAYSKSM GISKTIPLIV 600
  601 GIVHFFVALA TFVFFSVMPL GGLFGSYLKK HGRQYVASQT FTASFPRLHG NDMWMSYGLW 660
  661 VCVFGAKLAE SYFFLTLSFK DPIRILSPMQ IHQCAGVKYI GNVLCHKQPQ ILLGLMFFMD 720
  721 LTLFFLDSYL WYIICNTVFS VARSFYLGVS IWSPWRNIFS RLPKRIYSKV LATTDMEIKY 780
  781 KPKVLISQVW NAIIISMYRE HLLAIDHVQK LLYHQVPSEQ EGKRTLRAPT FFVSQEDQSF 840
  841 KTEFFPPGSE AERRISFFAQ SLSTPMPEPL PVDNMPTFTV LIPHYSEKIL LSLREIIRED 900
  901 EPYSRVTLLE YLKQLHPHEW DCFVKDTKIL ADETSQFNGE PEKSEKDVAK SKIDDLPFYC 960
  961 IGFKSAAPEY TLRTRIWSSL RSQTLYRTVS GFMNYSRAIK LLYRVENPEV VQMFGGNSEK1020
 1021 LERELERMAR RKFKIVVSMQ RYAKFNKEER ENTEFLLRAY PDLQIAYLDE EPPVNEGEEP1080
 1081 RLYSALIDGH CELLENGMRK PKFRIQLSGN PILGDGKSDN QNHSIIFYRG EYIQVIDANQ1140
 1141 DNYLEECLKI RSVLAEFEEL TTDNVSPYTP GIPSTNTNPV AILGAREYIF SENIGVLGDV1200
 1201 AAGKEQTFGT LFARTLAQIG GKLHYGHPDF LNGIFMTTRG GISKAQKGLH LNEDIYAGMN1260
 1261 AMIRGGRIKH CEYYQCGKGR DLGFGSILNF TTKIGTGMGE QMLSREYYYL GTQLPLDRFL1320
 1321 SFYYAHPGFH INNMFIMLSV QMFMIVLINL GALKHETITC RYNPDLPITD PLRPTYCANL1380
 1381 TPIVDWVNRC IISIFIVFFI SFVPLAVQEL TERGVWRMAM RLAKHFGSVS FMFEVFVCQI1440
 1441 YANAVHQNLS FGGARYIGTG RGFATARIPF GVLYSRFAGP SIYAGARSLL MLLFATSTVW1500
 1501 TAALIWFWVS LLALCISPFL FNPHQFAWND FFIDYRDYLR WLSRGNSRSH ASSWIGFCRL1560
 1561 SRTRITGYKR KLLGVPSEKG SGDVPRARLT NIFFSEIIAP LVLVAVTLVP YLYINSRTGV1620
 1621 RDNPETTDAI LRLAIVAAGP IAINAGVAGV FFGMACCMGP IFSMCCKKFG AVLAAIAHAI1680
 1681 AVIVLLAIFE VMFFLESWSW PRMLIGMIAA AAIQRFIYKL IIALALTREF KHDQSNIAWW1740
 1741 TGKWYNMGWH SMSQPGREFL CKITELGYFS ADFVLGHVLL FAMLPALCVP FIDKFHSVML1800
 1801 FWLRPSRQIR PPIYSLKQSK LRKRRVIRFA ILYFGMLILF LVLLIAPLVV RSMGLVKTPN1860
 1861 LPFNLLQPLD KDNNDTMVTY TGNNIPAGFE PVESASSVAT ATS

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