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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2108232
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGADGEEE IQFLRTDDHV VLQCTASILK EQIKLCLSCE GFGNRLCFLE TTSNAQNVPP  60
   61 DLAICCFILE QSLSVRALQE MLSNTSVDEA VDLDKWSSQG GGHRTLLYGH AILLKHTHSS 120
  121 MYLSCLTTSR SLTDKLAFDV GLQEDSTGEA CWWTIHPASK QRSEGEKVRV GDDLILVSVS 180
  181 SERYLHLSYA SGDLMVDASF MQTLWTMTPV MSGCELAEGF LIGGYVLRLF HGHMDECLAI 240
  241 PGADQGDDQR RVAHYEGGAV CSHARSLWRL EPLRIAWSGG HIKWGQSFRR HEITTGRYLC 300
  301 LEEEKGLLLV DPEKAVSKMS AFCFRISKEK IEVTQKRDVE GMGTPEIKYG ESMCFVQHAS 360
  361 SGLWLTYAAV DAKSARLGPL KRKAILHKEG HMDDALTVAR SQTEEAQAAR MIYSTTGLFN 420
  421 QFIKGLDTLS GKNKSANPPS LPMDTVVLSL QDLIFYFRPP GHELEHEDKQ FKLRSLKNRQ 480
  481 NLFQEEGMIT LVLDCVDRLN VYNTAAHFSE YAGEEAAESW KEIVNLLYEL LASLIRGNRA 540
  541 NCALFCDNLD WLVSKLDRLE ASSGILEVLY CVLIESPEVL NIIQENHIKS IISLLDKHGR 600
  601 NHKVLDVLCS LCVCNGVAVR SNQNLITENL LPGRDLLLQT NIINYVTSMR PNIFLGTCEG 660
  661 STQYKKWYFE VMVDQVEPFV TAQPYHLRVG WALTEGYSPY PGGGEGWGGN GVGDDLYSYG 720
  721 FDGLHLWSGR VPRHVATPSQ HILAAEDVVS CCLDLSVPSI SFRINGHPVQ GMFENFNLDG 780
  781 LFFPVVSFSA GVKLRFLLGG RHGDFKFLPP PGYAPCYEAV LPRDRLRIEP IKEYKHDFDG 840
  841 IRNLLGPTQS LSHTAFTPCP VDTIQIVLPP HLERIREKLA ENSHELWAVT RIEQGWTYGP 900
  901 FRDDNKKLHP CLVDFQSLPE PEKNYNLAMS GETLKTLLAL GCHVGMGDEK AEENLKRTKL 960
  961 PKTYMQSSGY KPAPLDLNHV KLTPNQNTLV ERLAENGHNV WARDRVRQGW TYSIVQDILN1020
 1021 KRNPRLVPYN LLDEKTKKTN RDTVCAAVRT LIGYGYNIEP PDQESSGHGP GSARENKIRL1080
 1081 FRAEKSYAIT QGKWYFEFEA VTVGEMRVGW ARPSVRADTE LVADELAYVF NGFKAQRWHV1140
 1141 GNEPFGRQWQ SGDVGGCMIA HRGMNIMFTL NGDMLISDSV SEMVYRDIEI GEGFIPVCSL1200
 1201 GLSQVGRINL GQNVSSLRYF TICGLQEGFE PFAINMKRDI TMWFSKSLPQ FITAPTDHPH1260
 1261 MEVSRVDGTV ETAPCLKVTH KTFGSQNANT DLLFLRLSMP VEFHETFKVP AGTTLLTRVL1320
 1321 TIPEDEVLEV DPDSDYEILK KSASRKEQEE EKKEPSVPKD IPATKNGENE KDPQQRKQEE1380
 1381 RFLFKAKKPA LITPPPVVPT MPRLVEDVVP DDRDDVDIIL NTTTYYYSVR VFAGQEPSGV1440
 1441 WVGWITPDYH QYDPHFDISK VRNVTVTVGD DKGNIHDSIK RSNCYMVWGG EFSSSQQTRV1500
 1501 SQEDFVIGCL IDLDTGLMTF TANGKEINTF YQVAPNTKLF PAVFVLPSSQ NMIQFELGKL1560
 1561 KNIMPISAAM FRSERKNPVP QCPPRLDVQM LTPVIWSRMP NHFLTPDTGR ITERLGWVVE1620
 1621 CQEPLTMMAL HIPEENRCID ILELSERMDL LKFHYHTLKL YGSVCALGNN RVAHALCSHV1680
 1681 DESQLFYAIE NTYLPGPMRS GFYDLLISMH LESAKRNRLG TNKEFIVPMT DETRTITLYS1740
 1741 DRSHALPGVG LTTCLRPKLH FSSTGFVGTD PDIYTLSPVI PLQVLKTKAL NMLTEAVQDG1800
 1801 GQAMRDPVGG SVEFHFVPIL KLISTLLIMG VFDDEDVTHI LKMIEPTVFS GKKAEEPAEE1860
 1861 NTKLKEEKEQ KGPPKVGPVK EEQQEAVEDE EEEYEDDGLG EEEEEEEEME EEEELEEMES1920
 1921 IIPDEDTGNK TEPPHGEKGA EETEKEIKPV ETTGEAKEEH LEQGLFQMKL PESVKLQMCT1980
 1981 LLQYFCDCEL RHRVEAITAF SDEFVSQIQS NQRQRYNELM LAFTMSAAET ARKTREFRSP2040
 2041 PQEQVNMLMN LKNCSEDEEC PIPDEVRESL LAFHNALLAH SGVHIVEEEQ GEEVDNSVRG2100
 2101 RLLRLLEKVK KFREKKVEVE PEPQEDKKPS TLQELISHTM IHWAQESFIQ NPELVRMMLS2160
 2161 LLHRQYDGLG ELMRALPKAH TINAVSIQDT MDLLECLGQI RSLLIVLMGP EEERLMIQSI2220
 2221 GNIMSNKVFY QNPNLMRALG MHETVMEVMV NVLGGGDSKE IRFPRVVTNC CRFLCYFCRI2280
 2281 SRQNQRSMFD HLSYLLQNSG IGLGMRGSTP LDVAAASCID NNELALALQE QDLEMVVKYL2340
 2341 AGCGLQSCPM LLSKGYPDIG WNPCGGEKYL DFLRFAVFVN GESVEENANV VVRLLIRRPE2400
 2401 CFGPALRGEG GNGLLAAIEE AIKISEDPAR DGPSVKKDRR FPMFGGEEQH EENRVHLGNA2460
 2461 IMSFYSALID LLGRCAPEMH LIQAGKGEAL RIRAILRSLV PIEDLVGVIS LPVQIPSFGK2520
 2521 DNSIIEPKMS ASFVPDHKAP MVLFLDRVYG IDNQDFLLHV LEVGFLPDMR AAASLDTVAF2580
 2581 STTEMALALN RYLCSAVLPL ITKCAPLFAG SDHRAIMIDS MLHTIYRLSR GRAFTKAQRD2640
 2641 IIEECLMALC KHLRPSMLQH LLRRLVFDVP ILNEYAQMPL KLLTNHYERC WKYYCLPNGW2700
 2701 ANFGVASEEE LYLTRKLFWG IFESLAHKKF DAEIFKISMP CICAIAGAIP PDYVDASYSS2760
 2761 KTEKKASVDA EGNFDPKPVE TTNTIIPERL DPFINRFAEY THDKWAFEKI QNNWSYGEVL2820
 2821 DENAKTHPML RPYKTFSEKD KEIYRWPIKE SIKAMLAWEW NIEKAREEEE SEKKKATSRK2880
 2881 ISQTAQATYD PSHGYSPQPI DISHVALSRD LQSMAEQLAE NYHNTWGRKK KLELQAKGGG2940
 2941 THPLLVPYDT LTAKEKARDR EKAYELLKFL QLNGYAVTRG LKDMESDISS IEKRFAYGFL3000
 3001 QKLLKWMEIA QEFIAHLEAV VSSGRVEKSP HEQEIKFFAK ILMPLINQYF KNHCLYFLST3060
 3061 PAKVLGSGGH SSNKEKEMIA SIFCKMSALV RHRVSLFGTD APAIVNCLHI LARSLDARTV3120
 3121 MKSGPEIVKA GLRSFFESAA DDIEKMVENL KLGKVSKGNQ QVKGVSQNIN YTTIALLPVL3180
 3181 TSLFDHIAQH QFGDDVILDD LQMSCYRIMC SIYSLGTVKN PHVERQRPAL GECLAHLAAA3240
 3241 MPVAYLEPLL NEFNAFSVYT TKTPRERAIL GLPNEVQELC PDIPELDALL KEIGDLAESG3300
 3301 ARYTEMPHVI EITLPMLCNY LPRWWERGPE NSPEMDGQLC TEVTSEHLNQ LLGSIMKIVV3360
 3361 NNLGIDEASW MKRLAVFSQP IVSRAKPEML KSHFIPTMEK VKKRTSKVVA EEDHLRMEGK3420
 3421 SEGDEEDGTI RDEFAVLCRD LYALYPLLIR YVDNNRARWL TCPDPDAEEL FRMVGEVFIF3480
 3481 WSKSHNFMRE EQNFVVMNEI NNMSFLTADS KSKMSKGGDS EGGGSDTERT KKKRRGDRYS3540
 3541 VQTSLIVAAL KKMLPIGLNM CSPADQELIN LAKIRYSLRD TDEEVREFLQ NNLHLQGKVD3600
 3601 NPSMRWQMAL YKEMAGKAED ADAPVKVVKR VQEVSAVLYH LEVTEHPFKS KKMVWHKLLS3660
 3661 KQRRRAVVAC FRMTPLYNIP RHRASNMFLE GYKRNWLHTE GYAFEDRMID DLSKAMEQEE3720
 3721 GDEEEEQETK PDPLHQLILH FSRTALTEKS KLDTDHLYMA YADIMAKSCH IGEEEEGGEE3780
 3781 MVENAEDEMS FEEKEMEKQR LLYQQSRLHN RGAAEMVLQM ISACKGDTGP MVSTTLKLGI3840
 3841 SILNGGNSEV QRKMLEYLKD KRDVGFFLSV QALMQTCCVL DLNAFERQNK AEGLGMVSEE3900
 3901 GTNEKVMSDD EFTCDLFRFL QLLCEGHNND FQNYLRTQTG STTTINIIIC TVDYLLRLQE3960
 3961 SISDFYWYYS GKDVIDEPGK KNFSKAMTVA KQIFNSLTEY IQGPCTGNQQ SLAHSRLWDA4020
 4021 IVGFLHVFGH MMMKLAQGKD SSQIGLLKEL LDLQKDMVVM LLSLLEGNVV NGTIARQMVD4080
 4081 MLVESSSNVE MILKFFDMFL KLKDIVASDA FSDYVTDPRG LISKKDFQKA MDSQKQYSPS4140
 4141 EIQFLLSCSE ADENDMINYE EFANRFQEPA KDIGFNIAVL LTNLSEHVPH DTRLQNFLEQ4200
 4201 AESVLNYFRP FLGRIEIMGA SRKIERIYFE ISEVNRRQWE MPQVRESKRQ FIFDVVNEGG4260
 4261 ESEKMEMFVN FCEDTIFEMN IASQISEQEE EEKGEEDDEI DEGGGEIGPG GGANGGGDED4320
 4321 SNGEEGQPES SSAFADFINS MLSFFSIFTF RNLRRQYRRV RKMTFKEIAV ALTTFFWTIL4380
 4381 MSILHFIYNV CKGFFMIIWQ TLFGGGLVEG AKNITVTEIL ASMPDPTQDD VHGDGPGEPR4440
 4441 TGEEQDTGGV TDTGETGSGE EEEEDTQEKE GGRIPGIDAP GGLGDMGVEA PVEPPTPEGT4500
 4501 PITKRKMQPE ETDASQKPPE PVPVEEPPQE PEKADVETGE KAEKESQSKE KEEPEEPKKS4560
 4561 ATKKEKKLKK EGGFQIWTEL ETQRNKFMNY LSRNFYNLRF LALFLAFALN FILLFYRVSD4620
 4621 TPPEGEEMEG SGLFEGSGMF EGSGLFEDLG EEAEGSGMDE GGDEDEEDMP VFYYLEERHC4680
 4681 YMQPTLAFLA ILHTVISFIC IIGYNCLKIP LVIFKREKEL ARKLEFDGLY ITEQPEDDDI4740
 4741 KGQWDRLVLN TPSFPNNCWD KFVKRKVLDK YGDIYGRERI AELLGVDLAS LDVSQQHEKK4800
 4801 QEEPDNSVFA WVTSIDIKYQ IWKFGVVFTD GTFLYLCWYL IMSLLGHYNN FFFACHLLDI4860
 4861 AMGVKTLRTI LSSVTHNGKQ LMMTVGLLAV VVYLYTVVAF NFFRKFYNKS EDEDEPDMKC4920
 4921 DDMMTCYLFH MYVGVRAGGG IGDEIEDPAG DEYELYRVVF DITFFFFVIV ILLAIIQGLI4980
 4981 IDAFGELRDQ QEQVKEDMET KCFICGIGSD YFDTTPHGFE THTLDEHNLA NYMFFLMYLI5040
 5041 NKDETEHTGQ ESYVWKMYQE RCWDFFPAGD CFRKQYEDQL S

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle