YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2144101, gi\|5...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APGGGARDRG ASGSGRRHGA GPRGAGGGRG GGSGTMSGEV PPNINIKEPR WDQSTFIGRA  60
   61 SHFFTVTDPK NILLTNEQLE NARKVVHDYR QGIVPAGLTE NELWRAKYAY DSAFHPDTGE 120
  121 KMTLIGRMSA QVPMNMTITG CMMTFYRTTP AVLFWQWINQ SFNAVVNYTN RSGDAPLTVN 180
  181 ELGTAYVSAT TGAVATALGL NALTKHVSPL IGRFVPFAAV AAANCINIPL MRQRELKVGI 240
  241 PVTDENGTRL GESTNAAKQA ITQVVISRIL MAAPGMAIPP FIMNTLEKKA FLKRFPWMSA 300
  301 PIQVTLVGFC LVFATPLCCA LFPQKSSMSV TSLEDDLQAS IQKSHPELRR VYFNKGL

Type	Start	End	Confidence
Cytoplasmic	1	131	0.95
Transmembrane Helix	132	154	0.72
Non-Cytoplasmic	155	181	0.85
Transmembrane Helix	182	203	0.72
Cytoplasmic	204	209	0.65
Transmembrane Helix	210	231	0.66
Non-Cytoplasmic	232	263	0.50
Transmembrane Helix	264	283	0.79
Cytoplasmic	284	299	0.49
Transmembrane Helix	300	323	0.87
Non-Cytoplasmic	324	357	0.56