YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67086540, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.78
Transmembrane Helix	6	24	0.87
Cytoplasmic	25	33	0.68
Transmembrane Helix	34	53	0.85
Non-Cytoplasmic	54	70	0.82
Transmembrane Helix	71	93	0.89
Cytoplasmic	94	100	0.85
Transmembrane Helix	101	121	0.92
Non-Cytoplasmic	122	129	0.83
Transmembrane Helix	130	150	0.86
Cytoplasmic	151	172	0.91
Transmembrane Helix	173	192	0.93
Non-Cytoplasmic	193	210	0.71
Transmembrane Helix	211	233	0.80
Cytoplasmic	234	242	0.85
Transmembrane Helix	243	264	0.90
Non-Cytoplasmic	265	276	0.79
Transmembrane Helix	277	298	0.90
Cytoplasmic	299	307	0.78
Transmembrane Helix	308	328	0.93
Non-Cytoplasmic	329	334	0.87
Transmembrane Helix	335	356	0.92
Cytoplasmic	357	360	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPLTFICLI AGLALLIAGA EALVRGAARL AARFGIPPLI IGLTVVAFGT SAPEMAVSVR  60
   61 SASGGQGDIA VGNAIGSNIF NVLMILGLSA LVIPLRVSRQ LIRFDVPVMI GVSLLAWLLA 120
  121 IDREYGRPDG ALLFAGILAY IAFQVRSGLN AGTSGDGNEF ETEFGRKPEG RLALPGHLAL 180
  181 VALGLAMLVW GSDLLIDATV TLARALGLSE LAIGLTMVAA GTSLPELATS LVAAIKGERD 240
  241 IAVGNIVGSN IFNLLAVLGL AALVSPAPIE VSPNALAFDY PVMIAAAAAC LPIFLTGYRI 300
  301 GRWEGLLFFG YYLAYGAYQV LFASGASAVD LLHDALAWYA LPLTAVTLLV IAVRGWRQRG 360
  361