YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|542575, gi\|459594
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSVEVAQSG PSAIFWLVQV LIVGAAQAAT PFAKEYRNAG LYNGNTLVDL DGSTTLDMGQ  60
   61 EKPTSSSSGL SGGFKSESSV VLPGMLQNSG CPLTTSSHCL RCNKAGCIKC PMYLVTDTRQ 120
  121 CVDQCPAGYL DQWSAHTEFM GRVCVPTGYS GPLMAALAGL LGGFLVCLSL LAVAVMLVKR 180
  181 KRRRKSIKQK LINENTMDRA DFMRQLNEMR PNAEYFLAML NDTRRQIRKL YLSGEVAAAN 240
  241 SYRPIVRDLA KLLILLNRPI ELIPAPPPDW SRLYAWSEQA LERYKPQVGQ LIDFFQASHG 300
  301 HSAGHHEVLY AAPNKKKQLQ QSSIFRQQVT PTATPQGVGE LMAGDRSSSA SAQQKLHLFG 360
  361 SLISLHEFEE PRASDPFGSS FNTLKSGNLI SDLNASSLWL EDEFYKLGFR PQDEITTEL

Type	Start	End	Confidence
Signal Peptide	1	28	0.77
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	154	0.98
Transmembrane Helix	155	178	0.93
Cytoplasmic	179	419	0.99