YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67159494, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNERPEESNK GPAADSLLPI DEHIEEGQDA EGRKVRHRGI YLLPNLFTTA NLFAGFYSIV  60
   61 SAINGNLDVA AATVFVAMVL DSLDGRVARL TNTQSAFGAE YDSLSDMVAF GLAPAILAFE 120
  121 WALGSMGKVG WMVAFVYVAG AALRLARFNT QIGKADKRFF IGLASPAAAG VVAGTVWAFN 180
  181 DFGIQGSNIS SLVALLVAAA GMLMVSNIKY YSFKDLDLKG RVPFVAILVV VLLFAVVFSD 240
  241 PPRILLLIFL AYAISGPVQY LLQWRRKRAG

Type	Start	End	Confidence
Cytoplasmic	1	39	0.98
Transmembrane Helix	40	60	0.90
Non-Cytoplasmic	61	68	0.69
Transmembrane Helix	69	88	0.70
Cytoplasmic	89	102	0.68
Transmembrane Helix	103	123	0.74
Non-Cytoplasmic	124	128	0.71
Transmembrane Helix	129	148	0.89
Cytoplasmic	149	158	0.93
Transmembrane Helix	159	179	0.96
Non-Cytoplasmic	180	188	0.80
Transmembrane Helix	189	208	0.93
Cytoplasmic	209	219	0.76
Transmembrane Helix	220	238	0.95
Non-Cytoplasmic	239	243	0.86
Transmembrane Helix	244	264	0.92
Cytoplasmic	265	270	0.98