YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10644529
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFVLFLSFY IFTLMGNLLI LLAXISSSRL HTPMYFFLCK LSIFDIFFPS VSSPKMLFYL  60
   61 SGNSRAISYA GCVSQLFFYH FLGCTECFLY TVMAYDRFVA ICYPLRYSII MSHRVCAILA 120
  121 TGTSFFGCIQ ATFLTTLTFQ LPYCGPNEVD YYFCDIPVML KLACADTSAL EMVGFISVGL 180
  181 MPLSCFLLIL TSYSCIVCSI LQIRSAEGRR RAFSTCSAHL TAILLFYMPV VLIYLRPTPS 240
  241 PWLDATVQVL NNLVTPMLNP LIYSL

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.79
Transmembrane Helix	6	26	0.93
Cytoplasmic	27	35	0.68
Transmembrane Helix	36	58	0.72
Non-Cytoplasmic	59	75	0.80
Transmembrane Helix	76	95	0.85
Cytoplasmic	96	114	0.81
Transmembrane Helix	115	134	0.95
Non-Cytoplasmic	135	177	0.92
Transmembrane Helix	178	201	0.87
Cytoplasmic	202	212	0.88
Transmembrane Helix	213	235	0.88
Non-Cytoplasmic	236	265	0.84