YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10644487
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIFALFLSMY LVTVLGNLLI IMAIITQSHL HTPMYFFLAN LSFVDICFTS TTIPKMLVNI  60
   61 YTQSKTITYE DCISQMCVFL VFAELDNFLL AVMAYDRYVA ICHPLCYTVI VNHRLCILLL 120
  121 LLSWVISIFH AFIQSLIVLQ LTFCGDVKIP HFFCELNQLS QLTCSDNFPS HLIMNLVPVM 180
  181 LAAISFSGIL YSYSKIVSSI HSISTVQGKY KAFSTCASHL SIVSLFYSTG LGVYVSSAVV 240
  241 QSSHSAASAS VMYTVVTPML NPXIYSX

Type	Start	End	Confidence
Cytoplasmic	1	6	0.72
Transmembrane Helix	7	27	0.92
Non-Cytoplasmic	28	34	0.58
Transmembrane Helix	35	54	0.70
Cytoplasmic	55	114	0.67
Transmembrane Helix	115	133	0.90
Non-Cytoplasmic	134	171	0.88
Transmembrane Helix	172	194	0.88
Cytoplasmic	195	214	0.85
Transmembrane Helix	215	235	0.84
Non-Cytoplasmic	236	244	0.67
Transmembrane Helix	245	265	0.61
Cytoplasmic	266	267	0.68