YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2695845
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLPQCVLLC ASLSLALSGQ HKPEASDYSS VLHCGLGGFQ FTVNLSQEAT SPPVLISWDK  60
   61 QGLLHKLQND SDCGTWIRKG PGSSVVLETN YSSCYVTEWD SHYIMPVGVE GAGAAEHKTV 120
  121 TERKLLKCPM DLLARDAPGT DWCGSIPAGD RLPCAPSPIS RGDCEKRGCC YSPGEVNSCF 180
  181 YGDTVTLDCT QEGHFSIAVS RNVASPPLLL DSVHLTFRND SVCKPVIATQ AFVLFRFPFT 240
  241 SCGTTKQITG DQAVYENELM ATRDVKNGSS GSVTRDSIFR LRVSCSYSVS SNSLPVNVQV 300
  301 FTLPPPFPET QAGPLTLELQ IAKDKNYGSY YGVGDYPVVK LLRDPIYVEV SILHRTDPHL 360
  361 ELFLHQCWAT PSTDPLSRPQ WPILVKGCPY TGDNYQTQLI PVQKALELPF PSHHQRFSIF 420
  421 TFSLVDPTSV KQALRGPVYL HCSVSVCQPA EPPSCVVTCP DLSRRRRNSD TSFQNTTASV 480
  481 SSKGPMILLQ ATKDPPEKLR ASVDSKLPWV AGLTGTLILG ALLVSYLAIR KRMNYPNQMC 540
  541 Q

Type	Start	End	Confidence
Signal Peptide	1	19	0.98
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	508	0.99
Transmembrane Helix	509	529	0.95
Cytoplasmic	530	541	0.97