YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10880462
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCNLAFADFC MGVYLLLIAS VDLYTHTEYY NHAIDWQTGP GCNTAGFFTV FASELSVYTL  60
   61 TVITLERWYA ITFAMRLDRK IRLRHAYTIM AGGWVSCFLL ALLPMVGISS YAKVSICLPM 120
  121 DTDTPLALAY IALVLLLNVV AFVIVCSCYV KIYITVRNPQ YNPRDKDTKI AKRMAVLIFT 180
  181 DFMCMAPISF YALSALMNKP LITVTNSKIL LVLFYPLNSC ANPFLYAI

Type	Start	End	Confidence
Cytoplasmic	1	6	0.80
Transmembrane Helix	7	26	0.83
Non-Cytoplasmic	27	44	0.87
Transmembrane Helix	45	65	0.88
Cytoplasmic	66	85	0.86
Transmembrane Helix	86	108	0.91
Non-Cytoplasmic	109	127	0.91
Transmembrane Helix	128	153	0.90
Cytoplasmic	154	173	0.93
Transmembrane Helix	174	195	0.90
Non-Cytoplasmic	196	228	0.62