YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10880458
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPVTLSLTPL QWFAREGSAF ITLSASVFSL LAIAIERQVA IAKVKLYGSD KSCRMLMLIG  60
   61 ASWLISLILG GLPILGWNCL DHLEACSTVL PLYAKHYVLC VVTIFSVILL AIVALYVRIY 120
  121 FVVRSSHADV AGPQTLALLK TVTIVLGVFI ICWLPAFSIL LLDSTCPVRA CPVPYKAHYF 180
  181 FAFATLNSLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.88
Transmembrane Helix	17	35	0.94
Cytoplasmic	36	54	0.87
Transmembrane Helix	55	77	0.91
Non-Cytoplasmic	78	96	0.89
Transmembrane Helix	97	120	0.90
Cytoplasmic	121	135	0.93
Transmembrane Helix	136	157	0.91
Non-Cytoplasmic	158	190	0.91