YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|987287
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CSKAVAENPL SLPTLLIFFH HPIVYLRVYI HPSFISFLDM AGSLSSAIFN VLKYSGMASL  60
   61 AVTLIALGFL YKYQKTLVYP SAFPQGSREN VPTPKEFNME YERIELRTRD KVTLDSYLML 120
  121 QSESPESRPT LLYFHANAGN MGHRLPIARV FYSALNMNVF IISYRGYGKS TGSPSEAGLK 180
  181 IDSQTALEYL MEHPICSKTK IVVYGQSIGG AVAIALTAKN QDRISALILE NTFTSIKDMI 240
  241 PTVFPYGGSI ISRFCTEIWS SQDEIRKIKK LPVLFLSGEK DEIVPPPQMV LLFGLCGSAK 300
  301 KKFHSFPKCT HNDTCLGDGY FQVIADFLAE NDINTPAS

Type	Start	End	Confidence
Cytoplasmic	1	11	0.64
Transmembrane Helix	12	31	0.56
Non-Cytoplasmic	32	50	0.46
Transmembrane Helix	51	71	0.83
Cytoplasmic	72	149	0.59
Transmembrane Helix	150	164	0.25
Non-Cytoplasmic	165	338	0.54