YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10803053
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	138	0.80
Transmembrane Helix	139	158	0.90
Non-Cytoplasmic	159	181	0.74
Transmembrane Helix	182	201	0.96
Cytoplasmic	202	212	0.67
Transmembrane Helix	213	234	0.89
Non-Cytoplasmic	235	239	0.65
Transmembrane Helix	240	259	0.91
Cytoplasmic	260	327	0.80
Transmembrane Helix	328	346	0.78
Non-Cytoplasmic	347	375	0.78
Transmembrane Helix	376	400	0.78
Cytoplasmic	401	441	0.77
Transmembrane Helix	442	464	0.78
Non-Cytoplasmic	465	469	0.57
Transmembrane Helix	470	492	0.77
Cytoplasmic	493	502	0.55
Transmembrane Helix	503	524	0.91
Non-Cytoplasmic	525	534	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILDSPEIL DTTSSSADNG AAHHTTLRRR QSARSVPPLL DSDSNSLEAE SAINDSENVR  60
   61 NDANLIENLR GGAVESENEK QESYGKEEGA KVKENGETSN GNGTDVMAVK FTFRPAAPAH 120
  121 RKNKESPLSS DAIFKQSHAG LFNLCIVVLV AVNSRLIIEN LMKYGWLIKS GFWFSSTSLR 180
  181 DWPLLMCCLS LPVFALASFL VEKLVKLNYI PEWVAVFLHV TITTVEILFP VVVILRCDSA 240
  241 VLSGVTLMLF ACTVWLKLVS YAHTNYDLRV LAKSLDKWEA MSRYWNLDYA YDVSFKSLAY 300
  301 FMVAPTLCYQ PSYPRTACIR KGWVVRQLIK LVIFTGLMGF IIEQYINPIV QNSQHPLKGN 360
  361 LLYAIERVLK LSVPNLYVWL CMFYCFFHLW LNILAELLCF GDREFYKDWW NARTVEEYWR 420
  421 MWNMPVHKWM VRHIYCPCLQ NGIPKIVAVL IAFLVSAIFH ELCVAVPCQI FKFWAFSGIM 480
  481 LQVPLVIVTN YLQEKFKNSM VGNMMFWCFF CIFGQPMCVL LYYHDLMNRK ASAR