YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1669848\|gb\|AA...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFIMITGYMI IEAIGGFLTN SLALLSDAGH MLSDSISLMV ALIAFTLAEK KANHNKTFGY  60
   61 KRFEILAAVI NGAALILISL YIIYEAIERF SNPPKVATTG MLTISIIGLV VNLLVAWIMM 120
  121 SGGDTKNNLN IRGAYLHVIS DMLGSVGAIL AAILIIFFGW GWANPLASII VAILVLRSGY 180
  181 NVTKDSIHIL MEGTPENIDV SDIIRTIEGT EGIQNIHDLH IWSITSGLNA LSCHAVVDDQ 240
  241 LTISESENIL RKIEHELEHK GITHVTIQME TEAHNHDNAI LCQPKMEKQR DHHHH

Type	Start	End	Confidence
Cytoplasmic	1	6	0.63
Transmembrane Helix	7	25	0.73
Non-Cytoplasmic	26	29	0.63
Transmembrane Helix	30	48	0.82
Cytoplasmic	49	64	0.80
Transmembrane Helix	65	84	0.95
Non-Cytoplasmic	85	96	0.82
Transmembrane Helix	97	120	0.88
Cytoplasmic	121	133	0.85
Transmembrane Helix	134	156	0.88
Non-Cytoplasmic	157	161	0.60
Transmembrane Helix	162	181	0.79
Cytoplasmic	182	295	0.89