YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|178753
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.65
Transmembrane Helix	15	34	0.79
Non-Cytoplasmic	35	100	0.84
Transmembrane Helix	101	120	0.76
Cytoplasmic	121	127	0.57
Transmembrane Helix	128	150	0.82
Non-Cytoplasmic	151	159	0.67
Transmembrane Helix	160	179	0.91
Cytoplasmic	180	187	0.74
Transmembrane Helix	188	211	0.89
Non-Cytoplasmic	212	226	0.70
Transmembrane Helix	227	246	0.86
Cytoplasmic	247	253	0.73
Transmembrane Helix	254	277	0.75
Non-Cytoplasmic	278	290	0.74
Transmembrane Helix	291	316	0.87
Cytoplasmic	317	322	0.68
Transmembrane Helix	323	341	0.70
Non-Cytoplasmic	342	346	0.63
Transmembrane Helix	347	367	0.88
Cytoplasmic	368	384	0.85
Transmembrane Helix	385	405	0.90
Non-Cytoplasmic	406	412	0.72
Transmembrane Helix	413	436	0.91
Cytoplasmic	437	449	0.90
Transmembrane Helix	450	469	0.83
Non-Cytoplasmic	470	478	0.69
Transmembrane Helix	479	499	0.90
Cytoplasmic	500	815	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLRSGICGL SPHRIFPSLL VVVALVGLLP VLRSHGLQLS PTASTIRSSE PPRERSIGDV  60
   61 TTAPPEVTPE SRPVNHSVTD HGMKPRKAFP VLGIDYTHVR TPFEISLWIL LACLMKIGFH 120
  121 VIPTISSIVP ESCLLIVVGL LVGGLIKGVG ETPPFLQSDV FFLFLLPPII LDAGYFLPLR 180
  181 QFTENLGTIL IFAVVGTLWN ASFLGGLMYA VCLVGGEQIN NIGLLDNLLF GSIISAVDPV 240
  241 AVLAVFEEIH INELLHILVF GESLLNDAVT VVLYHLFEEF ANYEHCGIVD IFLGFLSFFV 300
  301 VALGGVLVGV VYGVIAAFTS RFTSHIRVIE PLFVFLYSYM AYLSAELFHL SGIMALIASG 360
  361 VVMRPYVEAN ISHKSHTTIK YFLKMWSSVS ETLIFIFLGV STVAGSHHWN WTFVISTLLF 420
  421 CLIARVLGVL GLTWFINKFR IVKLTPKDQF IIAYGGLRGA IAFSLGYLLD KKHFPMCDLF 480
  481 LTAIITVIFF TVFVQGMTIR PLVDLLAVKK KQETKRSINE EIHTQFLDHL LTGIEDICGH 540
  541 YGHHHWKDKL NRFNKKYVKK CLIAGERSKE PQLIAFYHKM EMKQAIELVE SGGMGKIPSA 600
  601 VSTVSMQNIH PKSLPSERIL PALSKDNEEE IRKILRNNLQ KTRQRLRSYN RHTLVADPYE 660
  661 EAWNQMLLRR QKARQLEQKI NNYLTVPAHK LDSPTMSRAR IGSDPLAYEP KEDLPVITID 720
  721 PASPQSPESV DLVNEELKGK VLGLSRDPAK VAEEDEDDDG GIMMRSKETS SPGTDDVFTP 780
  781 APSDSPSSQR IQRCLSDPGP HPEPGEGEPS FPKGQ