YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5917787
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYIGAHGAA ALHRYKYSGE DHSYLAKYLL QPFWTRFVKV FPLWMPPNMI TLMGFMFLVT  60
   61 SSLLGYIYSP QLDSPPPRWV HFAQGLLLFL YQTFDAVDGK QARRTNSSSP LGELFDHGCD 120
  121 ALACALEAMA FGSTAMCGRE TFRSWVISAI PLQGATWEHY FTNTLILREI NGPTEGLALI 180
  181 YVSHLFTALV GAEWWAQQLG QSIPLFSWVP FVNAIQTSRA VLYMMIAFAV IPTVAINVSN 240
  241 VYKVVQSRKG SMLLALAMLY PFVVLLGGVL IWDSLSPINL IETYPHLVVL GTGLAFGFLV 300
  301 GRMILAHLCD EPKGLKTNMC MSLLYLPFAL ANALTARLNA GVPLVDELWV LLGYCIFTVS 360
  361 LYLHFATSVI HEITAALGIY CFRITRKEA

Type	Start	End	Confidence
Cytoplasmic	1	43	0.84
Transmembrane Helix	44	68	0.82
Non-Cytoplasmic	69	78	0.73
Transmembrane Helix	79	94	0.63
Cytoplasmic	95	176	0.78
Transmembrane Helix	177	196	0.92
Non-Cytoplasmic	197	219	0.87
Transmembrane Helix	220	241	0.91
Cytoplasmic	242	251	0.86
Transmembrane Helix	252	272	0.94
Non-Cytoplasmic	273	283	0.83
Transmembrane Helix	284	306	0.90
Cytoplasmic	307	318	0.85
Transmembrane Helix	319	340	0.85
Non-Cytoplasmic	341	359	0.67
Transmembrane Helix	360	382	0.74
Cytoplasmic	383	389	0.92