YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1293734
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFIFRIHYLF LLGFIHRFKY YAAWTISEGS CILCGLGYNG YDSKTQKIRW DRVRNIDIWT  60
   61 VETAQNTREM LEAWNMNTNK WLKYSVYLRV TKKGKKPGFR STLFTFLTSA FWHGTRPGYY 120
  121 LTFATGALYQ TCGKIYRRNF RPIFLREDGV TPLPSKKIYD LVGIYAIKLA FGYMVQPFII 180
  181 LDLKPSLMVW GSVYFYVHII VAFSFFLFRG PYAKQVTEFF KSKQPKEIFI RKQKKLEKDI 240
  241 SASSPNLGGI LKAKIEHEKG KTAEEEEMNL GIPPIELEKW DNAKEDWEDF CKDYKEWRNK 300
  301 NGLEIEEENL SKAFERFKQE FSNAASGSGE RVRKMSFSGY SPKPISKKEE

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.61
Transmembrane Helix	20	41	0.71
Cytoplasmic	42	97	0.81
Transmembrane Helix	98	115	0.55
Non-Cytoplasmic	116	118	0.50
Transmembrane Helix	119	136	0.42
Cytoplasmic	137	160	0.62
Transmembrane Helix	161	180	0.71
Non-Cytoplasmic	181	189	0.66
Transmembrane Helix	190	213	0.82
Cytoplasmic	214	350	0.82