YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AT1B3_RABIT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKEKKSFN QSLAEWKRFI YNPTSGEFLG RTAKSWGLIL LFYLVFYGFL AALFTFTMWV  60
   61 MLQTLNDEVP KYRDQIPSPG LMVFPKPLSA LEYTFSASDP SSYRGYIEDL RKFLKPYTLE 120
  121 EQKNLTVCPD GILSEQKGPV YVACQFPIFL LQACSGMSDP DFGYSQGSPC VLVKMNRIIG 180
  181 LKPEGTPRIE CIPKDENVAS ISTYPNNGII DLKYFPYYGK KLHVGYLQPL VAAQVIFSAN 240
  241 STKKEVTVEC KIDGSPNLKN QDDRDKFLGR VAFKIIARA

Type	Start	End	Confidence
Cytoplasmic	1	38	0.90
Transmembrane Helix	39	61	0.92
Non-Cytoplasmic	62	279	0.92