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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|9963869
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HELDPDYYEF ETHIFFDDAF EISDHSDDDI QCNRFVKLLI ATMDEAASEI HQTTIRLRPP  60
   61 KKYPTPYGGR LVWTLPGKTK FITHLKDKDR IRHRKRWSQV MYMYYLLGHR LMELPISVDR 120
  121 KDAIAENTYL LTLDGDIDFK PNAVTLLVDL MKKNKNLGAA CGRIHPVGSG PMVWYQLFEY 180
  181 AIGHWLQKAT EHMIGCVLCS PGCFSLFRGK ALMDDNVMKK YTTRSDEARH YVQYDQGEDR 240
  241 WLCTLLLQRG YRVEYSAASD AYTHCPEGFN EFYNQRRRWV PSTIANIMDL LADAKRTIKI 300
  301 NDNISLLYIF YQMMLMGGTI LGPGTIFLML VGAFVAAFRI DNWTSFHYNI VPILAFMFIC 360
  361 FTCKSNIQLF VAQVLSTAYA LIMMAVIVGT ALQLGEDGIG SPSAIFLISM VGSFFIAACL 420
  421 HPQEFWCITC GLIYLLSIPS MYLLLILYSI INLNVVSWGT REVVAKKTKK ELEAEKKAAE 480
  481 EAKKRVKQKS MLSFLQSGIG DNGDEEGSVE FSLAGLFRCI FCTHGKTSDE KQQLTSIAES 540
  541 LDTIKHRMDT IESAVDPHGH HASRHGRRRT TSSGSKDHHL LTSVAEKSGD ESDESDSDTS 600
  601 AEPKQERDFL TNPYWIEDPD VRKGEVDFLS STEIQFWKDL IDQYLYPIDN DPVEQARIAK 660
  661 DLKELRDSSV FAFFMINALF VLIVFLLQLN KDNIHVKWPF GVRTNITYDE STQEVHISKE 720
  721 YLQLEPIGLV FVFFFALILI IQFTAMLFHR FGTISHILAS TELNFCKKKS EDLTQDQLID 780
  781 KHAVEIVKNL QRLQGIDGDY DNDSGSGPDR IARRKTIQNL EKARQPRRQI GTLDVAFKKR 840
  841 FLKLTADAEN NPATPILTRR LTMRAETIRA LEVRKNSVMA ERRKSAMQTL GAKNEYGITT 900
  901 GAPINNNGAL PNQRSGRVSN AGISIKDVFN VNGGGAEQIY GSNGGGTINQ GYEHVIDEDG 960
  961 DGNSLRLTTR NPHPHPHHQV SWGQNTNGGG GNGTGRL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle