YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PME8_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIISLSISI GIAIIAVLAS KTLFKTHPEA FGIKAISYSF KKSLCDHHHH HHHHHHHHHR  60
   61 HKPSDTKRKV SICDDFPKNI PPLDTDTTSY LCVDKNGCCN FTTVQSAVDA VGNFSQRRNV 120
  121 IWINSGMYYE KVVIPKTKPN ITLQGQGFDI TAIAWNDTAY SANGTFYCAT VQVFGSQFVA 180
  181 KNISFMNVAP IPKPGDVGAQ AVAIRIAGDE SAFVGCGFFG AQDTLHDDRG RHYFKDCYIQ 240
  241 GSIDFIFGNA KSLYQDCRII SMANQLSPGS KAVNGAVTAN GRSSKDENSG FSFVNCTIGG 300
  301 TGHVWLGRAW RPYSRVVFVS TTMTDVIAPE GWNNFNDPSR DATIFYGEYN CSGPGADMSK 360
  361 RAPYVQKLNE TQVALLINTS FIDGDQWLQF SDL

Type	Start	End	Confidence
Signal Peptide	1	19	0.98
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	393	0.99