YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42571453
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.77
Transmembrane Helix	7	26	0.94
Non-Cytoplasmic	27	36	0.74
Transmembrane Helix	37	54	0.57
Cytoplasmic	55	70	0.58
Transmembrane Helix	71	92	0.43
Non-Cytoplasmic	93	97	0.68
Transmembrane Helix	98	118	0.79
Cytoplasmic	119	132	0.69
Transmembrane Helix	133	153	0.85
Non-Cytoplasmic	154	176	0.86
Transmembrane Helix	177	198	0.91
Cytoplasmic	199	208	0.84
Transmembrane Helix	209	229	0.94
Non-Cytoplasmic	230	238	0.79
Transmembrane Helix	239	262	0.88
Cytoplasmic	263	275	0.82
Transmembrane Helix	276	295	0.87
Non-Cytoplasmic	296	304	0.76
Transmembrane Helix	305	327	0.80
Cytoplasmic	328	346	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAVSVITLM GFMFLVTSSL LGYIYSPQLD SPPPRWVHFA HGLLLFLYQT FDAVDGKQAR  60
   61 RTNSSSPLGE LFDHGCDALA CAFEAMAFGS TAMCGRDTFW FWVISAIPFY GATWEHYFTN 120
  121 TLILPVINGP TEGLALIFVS HFFTAIVGAE WWAQQLGQSI PLFSWVPFVN EIQTSRAVLY 180
  181 MMIAFAVIPT VAFNVTNVYK VVRSRNGSMV LALAMLYPFV VLLGGVLIWD YLSPINLIAT 240
  241 YPHLVVLGTG LAFGFLVGRM ILAHLCDEPK GLKTNMCMSL LYLPFALANA LTARLNAGVP 300
  301 LVDELWVLLG YCIFTVSLYL HFATSVIHEI TEALGIYCFR ITRKEA