YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42571445
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.73
Transmembrane Helix	21	39	0.64
Non-Cytoplasmic	40	79	0.56
Transmembrane Helix	80	103	0.64
Cytoplasmic	104	113	0.69
Transmembrane Helix	114	137	0.83
Non-Cytoplasmic	138	186	0.88
Transmembrane Helix	187	207	0.91
Cytoplasmic	208	221	0.84
Transmembrane Helix	222	242	0.85
Non-Cytoplasmic	243	250	0.80
Transmembrane Helix	251	270	0.93
Cytoplasmic	271	278	0.79
Transmembrane Helix	279	301	0.76
Non-Cytoplasmic	302	317	0.75
Transmembrane Helix	318	341	0.88
Cytoplasmic	342	349	0.77
Transmembrane Helix	350	366	0.57
Non-Cytoplasmic	367	390	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALHCYSPFS VLSQFRGSKG NRVIICADLL SALLLRAIGQ KLQKSYRMNL RPLGVLRSSQ  60
   61 DRGILPCGDI AALVYLWNPF TILSCVGLST SPIENLAVIV SLYGAVTRRV PLAAFGLIMA 120
  121 THLSLYSAPL VFPLIFLLGY GLDAPPIKKF LQTRHGGVET GSTSDVSKQE KLTPTTQLPF 180
  181 SWRTVLHFVF WVLVWSSYVL VLCSLSLKQY GGLEEMFKRT YGFILRIEDL SPNIGVFWYF 240
  241 FAEAFEFSRN YLLIIFNLYI LLTSIPSLMF RLKHRPCFLA FAYLAFTSIL KSYPSVGDAA 300
  301 LYLSLWALFV NELTDMEYSF FIFCGYIGFS LLSPVMHNFW IWRGTGNANF YFGNAMGYAC 360
  361 FQFMFVEKSV NAMLNHDQAL KKATAEMTKN