YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	B3GT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFKNRGDYN FTPRNVVSRN SVFFMCLASF CLGMFFTNRM WNIVPEARGI SRLSKLSLSS  60
   61 SDCDKKNVLD YGNNTIGILD KSISNLEMKL VAARAERESL SGKFNISNEA KKRKYFMVIG 120
  121 INTAFSSRKR RDSVRSTWMP QGENLKKLEE EKGIIVRFVI GHSVLSHGIL DKAIEAEEKT 180
  181 HGDFLRLEHT EGYMKLSAKT KTFFATAVSL WDAEFYIKVD DDVHVNLASL KKALSAHQNK 240
  241 PRVYVGCMKS GPVLARKSVK YHEPEYWKFG EVGNKYFRHA TGQFYAISKD LATYILINQD 300
  301 LLHKYANEDV SLGSWFIGLN VEHVDEKRLC CSTSQDCELK AMMGHVCAAS FDWKCSGICR 360
  361 SAERMADVHE RCGEPQNALW TSNS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.79
Transmembrane Helix	21	41	0.86
Non-Cytoplasmic	42	384	0.92