YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42572147
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHKVSKRVI SLKWVPFLCI SFFALGAIFT SRSWEPSSDS GSQLISQHHR DHELQIVSDD  60
   61 CAHNKKATQE KDVTGEVLRT HEAIQDDRSL DKSVSTLSST RSSQEMVDGS ETNPRKKVFM 120
  121 VMGINTAFSS RKRRDSVRET WMPQGEKLER LEQEKGIVIK FMIGHSATSN SILDRAIDSE 180
  181 DAQHKDFLRL EHVEGYHELS AKTKIFFSTA VAKWDAEFYI KVDDDVHVNL GMLASTLARH 240
  241 RSKPRVYIGC MKSGPVLAQK TVKYHEPEYW KFGEDGNKYF RHATGQIYAI SKDLANYISI 300
  301 NQPILHKYAN EDVSLGSWFI GLEVEHIDDR NFCCGTPPDC RWKAEAGDVC VASFEWSCSG 360
  361 ICKSVERMKI VHEVCSEGEG AVWNTLL

Type	Start	End	Confidence
Cytoplasmic	1	9	0.58
Transmembrane Helix	10	30	0.55
Non-Cytoplasmic	31	387	0.99