YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLST3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.98
Transmembrane Helix	55	74	0.92
Non-Cytoplasmic	75	92	0.92
Transmembrane Helix	93	116	0.90
Cytoplasmic	117	124	0.87
Transmembrane Helix	125	143	0.91
Non-Cytoplasmic	144	149	0.66
Transmembrane Helix	150	172	0.88
Cytoplasmic	173	182	0.79
Transmembrane Helix	183	203	0.91
Non-Cytoplasmic	204	213	0.71
Transmembrane Helix	214	234	0.93
Cytoplasmic	235	291	0.96
Transmembrane Helix	292	315	0.84
Non-Cytoplasmic	316	327	0.82
Transmembrane Helix	328	349	0.93
Cytoplasmic	350	356	0.90
Transmembrane Helix	357	377	0.95
Non-Cytoplasmic	378	386	0.76
Transmembrane Helix	387	408	0.87
Cytoplasmic	409	422	0.76
Transmembrane Helix	423	445	0.90
Non-Cytoplasmic	446	452	0.78
Transmembrane Helix	453	472	0.94
Cytoplasmic	473	495	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSVRRTYTI MRGRHIDKRV PSKEFLSALD KAETAVRLPT GTGKDCGNPS WKRSLPHVLV  60
   61 ASLTSLLFGY HLGVVNETLE SISIDLGFSG NTIAEGLVVS TCLGGAFIGS LFSGLVADGV 120
  121 GRRRAFQLSA LPMIVGASVS ASTESLMGML LGRFLVGIGM GIGPSVTALY VTEVSPAYVR 180
  181 GTYGSSTQIA TCIGLLGSLF AGIPAKDNLG WWRICFWIST VPAAMLAVFM ELCVESPQWL 240
  241 FKRGRAAEAE AVFEKLLGGS YVKAAMAELV KSDRGDDADS AKLSELLFGR SFRVVFIGST 300
  301 LFALQQLSGI NAVFYFSSTV FKKAGVPSAS ANICVGVCNL LGSTVAVVLM DKLGRKVLLI 360
  361 GSFAGMAVSL GLQAIAYTSL PSPFGTLFLS VGGMLLFVLS FATGAGPVPS LLLSEICPGR 420
  421 LRATALAVCL AVHWVINFFV GLLFLRMLEQ LGSVLLNAIF GFFCVVAVIF VQKNVVETKG 480
  481 KSLQEIEISL LSSTQ