YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22330726
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKEGSKMN IAIIHPDLGI GGAERLIVDA AVELASHGHK VHIFTSHHDK SRCFEETLSG  60
   61 IFQVTVYGSF LPRHIFYRLH AVCAYLRCLF VALCVLLGWS SFDVVLADQV SVVVPLLKLK 120
  121 RSSKVVFYCH FPDLLLAKHT TTLRRMYRKP IDFIEEQTTG MADMILVNSN FTASTFANTF 180
  181 KRLNAQGSRP AVLYPAVNID QFIEPHTYKL NFLSINRFER KKNIDLAVSA FAILCKHKQN 240
  241 LSDVTLTVAG GYDERLKENV EYLEELRSLA EKEGVSDRVN FITSCSTAER NELLSSCLCV 300
  301 LYTPTDEHFG IVPLEAMAAY KPVIACNSGG PVETVKNGVT GYLCEPTPED FSSAMARFIE 360
  361 NPELANRMGA EARNHVVESF SVKTFGQKLN QYLVDVVSSP KED

Type	Start	End	Confidence
Cytoplasmic	1	82	0.80
Transmembrane Helix	83	102	0.77
Non-Cytoplasmic	103	403	0.96