YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCAM5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGRYDRNTF DEQDEVNPFA NPGSVPAASN SRLSPLPPEP AGFGYGRTVD IPLDRPGSGA  60
   61 QDLKKKEKEL QAKEADLRRR EQDLKRKQDA AARAGIVIEA KNWPTFFPLI HHDIANEILV 120
  121 RLQRLQYIAF ATYLGLVLAL FWNIIAVTTA WIKGEGVTIW LLAVIYFISG VPGGYVLWYR 180
  181 PLYRAFRSDS AFNFGWFFLF YMLHILFCLF AAVAPPIVFK GKSLAGILPA IDVLSAQALV 240
  241 GIFYFIGFGL FCLESVVSIW VIQQVYMYFR GSGKADDMRR DAARGAMRAA I

Type	Start	End	Confidence
Cytoplasmic	1	128	0.95
Transmembrane Helix	129	150	0.92
Non-Cytoplasmic	151	157	0.76
Transmembrane Helix	158	179	0.94
Cytoplasmic	180	193	0.87
Transmembrane Helix	194	218	0.86
Non-Cytoplasmic	219	239	0.82
Transmembrane Helix	240	262	0.87
Cytoplasmic	263	291	0.93