YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42572103
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRGKKNSDA GDRLTNSDTR TGSSELNAMM KPSLSSMKTM GLLLAVLMVA SVMFSLSVVL  60
   61 RDPPSDDVIE TEAASRVLQS RLHQAIESDG GLSEKKAQLG NINLVPSFDK ESCLSRYEAS 120
  121 LYRKESPFKQ SSYLDYRLQR YEDLHRRCGP FTRSYNLTLD KLKSGDRSDG EVSGCRYVIW 180
  181 LNSNGDLGNR MLSLASAFLY ALLTNRFLLV ELGVDMADLF CEPFPNTTWF LPPEFPLNSH 240
  241 FNEQSLLRNS GNPMVAYRHV VRDSSDQQKL FFCEDSQVLL EETPWLILKA DSFFLPSLFS 300
  301 VSSFKQELQM LFPEKDTAFH FLSQYLFHPT NVVWGLITRY YNAYLAKADQ RIGIYIGVSE 360
  361 SGNEQFQHLI DQILACGTRH KLLPEVDKQR NLPSSQVLNR KSKAVFISSS SPGYFKSIRD 420
  421 VYWENPTVMG EIISVHKPSY KDYQKTPRNM ESKRAWAEIY LLSCSDALVV TGLWSSLVEV 480
  481 AHGLGGLKPW VLNKAENGTA HEPYCVKARS IEPCSQATLF HGCKD

Type	Start	End	Confidence
Cytoplasmic	1	38	0.94
Transmembrane Helix	39	60	0.88
Non-Cytoplasmic	61	525	0.96