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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SERK1_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSYVVFIL LSLILLPNHS LWLASANLEG DALHTLRVTL VDPNNVLQSW DPTLVNPCTW  60
   61 FHVTCNNENS VIRVDLGNAE LSGHLVPELG VLKNLQYLEL YSNNITGPIP SNLGNLTNLV 120
  121 SLDLYLNSFS GPIPESLGKL SKLRFLRLNN NSLTGSIPMS LTNITTLQVL DLSNNRLSGS 180
  181 VPDNGSFSLF TPISFANNLD LCGPVTSHPC PGSPPFSPPP PFIQPPPVST PSGYGITGAI 240
  241 AGGVAAGAAL LFAAPAIAFA WWRRRKPLDI FFDVPAEEDP EVHLGQLKRF SLRELQVASD 300
  301 GFSNKNILGR GGFGKVYKGR LADGTLVAVK RLKEERTPGG ELQFQTEVEM ISMAVHRNLL 360
  361 RLRGFCMTPT ERLLVYPYMA NGSVASCLRE RPPSQPPLDW PTRKRIALGS ARGLSYLHDH 420
  421 CDPKIIHRDV KAANILLDEE FEAVVGDFGL AKLMDYKDTH VTTAVRGTIG HIAPEYLSTG 480
  481 KSSEKTDVFG YGIMLLELIT GQRAFDLARL ANDDDVMLLD WVKGLLKEKK LEMLVDPDLQ 540
  541 TNYEERELEQ VIQVALLCTQ GSPMERPKMS EVVRMLEGDG LAEKWDEWQK VEILREEIDL 600
  601 SPNPNSDWIL DSTYNLHAVE LSGPR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle