YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAT10_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.60
Transmembrane Helix	48	70	0.87
Cytoplasmic	71	78	0.51
Transmembrane Helix	79	98	0.81
Non-Cytoplasmic	99	102	0.43
Transmembrane Helix	103	127	0.73
Cytoplasmic	128	140	0.49
Transmembrane Helix	141	165	0.82
Non-Cytoplasmic	166	181	0.45
Transmembrane Helix	182	213	0.76
Cytoplasmic	214	233	0.83
Transmembrane Helix	234	252	0.84
Non-Cytoplasmic	253	298	0.77
Transmembrane Helix	299	319	0.76
Cytoplasmic	320	332	0.56
Transmembrane Helix	333	347	0.54
Non-Cytoplasmic	348	348	0.04
Transmembrane Helix	349	363	0.58
Cytoplasmic	364	376	0.53
Transmembrane Helix	377	397	0.83
Non-Cytoplasmic	398	404	0.46
Transmembrane Helix	405	425	0.91
Cytoplasmic	426	432	0.59
Transmembrane Helix	433	453	0.90
Non-Cytoplasmic	454	473	0.71
Transmembrane Helix	474	496	0.78
Cytoplasmic	497	541	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNGGGGNNG AANRTEELQP HPVKEQLPGI QYCVNSPPPW LEAVVLGFQH YLLSLGITVL  60
   61 IPSVLVPLMG GGYAEKVKVI QTLLFVSGLT TLFQSFFGTR LPVIAVASYA YIIPITSIIY 120
  121 STRFTYYTDP FERFVRTMRS IQGALIITGC FQVLICILGV WRNIVRFLSP LSIAPLATFT 180
  181 GLGLYHIGFP LLARCVEVGL PGLILLIFVT QYLPRFLKMK KGVMILDGSR CDRYGMILCI 240
  241 PLVWLFAQLL TSSGVYDHKS HTTQTSCRTD RTGLITNTPW IYIPYPFQWG SPTFDITDSF 300
  301 AMMAASFVTL FESTGLFYAS ARYGSATPIP PSVVSRGTCW LGVGVLLNGM LGGITGITTS 360
  361 TENVGLLAMT KIGSRRVIQI SAAFMIFFSI FGKFGAFFAS IPLPIMASLY CIVLCFVSSV 420
  421 GLSYLQFCNL NSFNIKFILG FSFFMAISIP QYFREYYNGG WRSDHHSNWL EDMIRVIFMS 480
  481 HTTVAAIIAI VLDCTLCRDS DEAKKDCGMK WWDKFRLYNL DVRNDEFYGL PCRLNKFFPS 540
  541 H