YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YC20L_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACQIQASRV FPVLEIEKGL SFMINVFHRR IKASSITLTS FPYPMKSFQI RRPNRKIAFA  60
   61 LDTGSSIPGD SGEGQEMNGD RTGLGSTRLG RIAIAGGKQL LGKINSARKN FPMKIFLLLL 120
  121 GFYTANALAT ILGQTGDWDV LVAGIVVAAI EGIGMLMYKK PSSSMFSGKL QSFVVFMNFW 180
  181 KAGVCLGLFV DAFKLGS

Type	Start	End	Confidence
Cytoplasmic	1	112	0.98
Transmembrane Helix	113	133	0.92
Non-Cytoplasmic	134	139	0.83
Transmembrane Helix	140	158	0.96
Cytoplasmic	159	172	0.84
Transmembrane Helix	173	193	0.81
Non-Cytoplasmic	194	197	0.74