YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.71
Transmembrane Helix	42	64	0.87
Non-Cytoplasmic	65	116	0.73
Transmembrane Helix	117	142	0.77
Cytoplasmic	143	151	0.73
Transmembrane Helix	152	173	0.91
Non-Cytoplasmic	174	180	0.82
Transmembrane Helix	181	199	0.77
Cytoplasmic	200	210	0.81
Transmembrane Helix	211	232	0.88
Non-Cytoplasmic	233	250	0.72
Transmembrane Helix	251	271	0.87
Cytoplasmic	272	279	0.64
Transmembrane Helix	280	301	0.89
Non-Cytoplasmic	302	359	0.81
Transmembrane Helix	360	381	0.91
Cytoplasmic	382	412	0.82
Transmembrane Helix	413	434	0.95
Non-Cytoplasmic	435	441	0.75
Transmembrane Helix	442	464	0.91
Cytoplasmic	465	525	0.61
Transmembrane Helix	526	548	0.90
Non-Cytoplasmic	549	572	0.58
Transmembrane Helix	573	590	0.37
Cytoplasmic	591	597	0.61
Transmembrane Helix	598	617	0.94
Non-Cytoplasmic	618	638	0.66
Transmembrane Helix	639	664	0.81
Cytoplasmic	665	675	0.78
Transmembrane Helix	676	698	0.90
Non-Cytoplasmic	699	734	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAIELHKPE INADDDDDES PVEQVRLTVS NHDDPSLPVW TFRMWFLGLL SCILLSFLNT  60
   61 FFGYRTQPLM ITMISVQVVT LPLGKLMARV LPETKYKIGS WEFSFNPGPF NVKEHVLISM 120
  121 FANAGAGFGS GTAYAVGIVD IIMAFYKRKI SFLASWILVI TTQILGYGWA GIMRKLVVDP 180
  181 AQMWWPTSVL QVSLFRALHE KDNARMSRGK FFVIAFVCSF AWYIFPAYLF LTLSSISWVC 240
  241 WAFPKSITAQ QLGSGMSGLG IGAFALDWSV IASYLGSPLV TPFFAIVNVL VGYVLVMYMV 300
  301 IPISYWGMNV YEANKFPIFS SDLFDKQGQL YNISTIVNNK FELDMENYQQ QGRVYLSTFF 360
  361 AISYGIGFAA IVSTLTHVAL FNGKGIWQQV RASTKAKMDI HTRLMKKYKD IPGWWFYSLL 420
  421 AISLVLSLVL CIFMKDEIQM PWWGLLLASF MALTFTVPVS IITATTNQTP GLNIITEYLM 480
  481 GVLLPGRPIA NVCFKTYGYI SMSQAISFLN DFKLGHYMKI PPRSMFLVQF IGTVIAGTVN 540
  541 ISVAWYLLTS VENICQKELL PPNSPWTCPS DRVFFDASVI WGLVGPKRIF GRLGNYPALN 600
  601 WFFLGGLIGP VLVWLLQKAF PTKTWISQIN LPVLLGATAA MPPATSVNFN CWIIVGVIFN 660
  661 YFVFKYCKKW WQRYNYVLSA ALDAGLAFMG VLLYFSLTMN GISINHWWGA KGENCPLASC 720
  721 PTAPGVLVDG CPVF