YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GSXL5_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPALSPTRS HHVAVIGAGP AGLVAARELR REGHSVVVFE KQKQVGGTWI YTDEVESDPL  60
   61 SVDPTRSVVH SSVYRSLRIN GTRECTGYRD FPFVVRSGVS RDRRRFPSHG EVLAYLKDFA 120
  121 KEFGIEEMVR FETEVVKVSP AAEEGIGKWR IESTEKEKKV RRDEIYDAVV VCNGHYVEPR 180
  181 LAQIPGISSW PGKEMHSHNY RIPEPFRDKV AVLIGNSSSA EDISRDIARV AKEVHVACRS 240
  241 NPADTFIKQT GYNNLWTHSM IESVHEDGSV VYQNGKTISV DIIMHCTGYK YHFPFLDTNG 300
  301 IVTVDDNRVG PLYKDVFPPA FAPWLSFIGI PWQVLPFPMF ELQSKWIAGV LSGRIPLPSK 360
  361 EDMMIEIKTF YSTLEVQGIP KRYTHRMGNT QFEYDNWLAS QCGCSETEEW RKEMCLANGV 420
  421 RKEAHPETYR DEWDDHHLVS EAYQDFSLYS

Type	Start	End	Confidence
Signal Peptide	1	26	0.76
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	450	0.97