YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LHTL3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.89
Transmembrane Helix	38	60	0.85
Non-Cytoplasmic	61	65	0.70
Transmembrane Helix	66	88	0.88
Cytoplasmic	89	182	0.69
Transmembrane Helix	183	206	0.79
Non-Cytoplasmic	207	225	0.46
Transmembrane Helix	226	248	0.57
Cytoplasmic	249	269	0.74
Transmembrane Helix	270	292	0.91
Non-Cytoplasmic	293	309	0.77
Transmembrane Helix	310	334	0.83
Cytoplasmic	335	354	0.80
Transmembrane Helix	355	375	0.89
Non-Cytoplasmic	376	380	0.71
Transmembrane Helix	381	402	0.92
Cytoplasmic	403	411	0.90
Transmembrane Helix	412	434	0.92
Non-Cytoplasmic	435	451	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGIPSSSNQ ILNQDLVEDQ SFELEDWLPI TASRNANWYY SAFHNVTAIV GAGVLGLPYA  60
   61 MSELGWGPGV VVLILSWVIT LYTFWQMIEM HEMFEGKRFD RYHELGQAAF GKKLGLYIVV 120
  121 PLQLLVETSA CIVYMVTGGE SLKKIHQLSV GDYECRKLKV RHFILIFASS QFVLSLLKNF 180
  181 NSISGVSLVA AVMSMSYSTI AWVASLTKGV ANNVEYGYKR RNNTSVPLAF LGALGEMAFA 240
  241 YAGHNVVLEI QATIPSTPEN PSKRPMWKGA IVAYIIVAFC YFPVALVGFW TFGNNVEENI 300
  301 LKTLRGPKGL IIVANIFVII HLMGSYQVYA MPVFDMIESV MIKKWHFSPT RVLRFTIRWT 360
  361 FVAATMGIAV ALPHFSALLS FFGGFIFAPT TYFIPCIIWL ILKKPKRFSL SWCINWICII 420
  421 LGVLVMIIAP IGGLAKLMNA LKQPDSSCKS T