YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110742781, gi...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSVALVPLT VGASAAYLET GLFLARRYVT LLLSSILIIT WLNLSNDVYD FDTGADKNKM  60
   61 ESVVNLVGSR TGTLAAAITS LALGVSGLVW TSLNASNIRA ILLLASAILC GYVYQCPPFR 120
  121 LSYQGLGEPL CFAAFGPFAT TAFYLLLGSS SEMRHLPLSG RVLSSSVLVG FTTSLILFCS 180
  181 HFHQVDGDLA VGKYSPLVRL GTEKGAFVVR WTIRLLYSML LVLGLTRILP LPCTLMCFLT 240
  241 LPVGNLVSSY VEKHHKDNGK IFMAKYYCVR LHALLGAALS LGLVIAR

Type	Start	End	Confidence
Cytoplasmic	1	23	0.88
Transmembrane Helix	24	44	0.84
Non-Cytoplasmic	45	71	0.91
Transmembrane Helix	72	91	0.94
Cytoplasmic	92	99	0.72
Transmembrane Helix	100	116	0.96
Non-Cytoplasmic	117	125	0.73
Transmembrane Helix	126	148	0.88
Cytoplasmic	149	161	0.81
Transmembrane Helix	162	182	0.90
Non-Cytoplasmic	183	224	0.87
Transmembrane Helix	225	247	0.83
Cytoplasmic	248	265	0.89
Transmembrane Helix	266	286	0.90
Non-Cytoplasmic	287	287	0.93