YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAT7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.61
Transmembrane Helix	48	68	0.84
Cytoplasmic	69	80	0.58
Transmembrane Helix	81	100	0.63
Non-Cytoplasmic	101	106	0.54
Transmembrane Helix	107	126	0.75
Cytoplasmic	127	141	0.74
Transmembrane Helix	142	163	0.88
Non-Cytoplasmic	164	177	0.50
Transmembrane Helix	178	212	0.63
Cytoplasmic	213	224	0.54
Transmembrane Helix	225	245	0.91
Non-Cytoplasmic	246	288	0.61
Transmembrane Helix	289	303	0.65
Cytoplasmic	304	304	0.02
Transmembrane Helix	305	319	0.56
Non-Cytoplasmic	320	332	0.48
Transmembrane Helix	333	354	0.67
Cytoplasmic	355	371	0.68
Transmembrane Helix	372	394	0.80
Non-Cytoplasmic	395	400	0.66
Transmembrane Helix	401	422	0.89
Cytoplasmic	423	431	0.70
Transmembrane Helix	432	449	0.91
Non-Cytoplasmic	450	473	0.86
Transmembrane Helix	474	494	0.86
Cytoplasmic	495	538	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGGGGGGG VAPPLKHDGL EPHPVKDQLS SISYCITSPP PWPEAILLGF QHYLVMLGTT  60
   61 VLIPTYLVPQ MGGGNEEKAK MVQTLLFVSG LNTLLQSFFG TRLPAVIGGS YTYVPTTLSI 120
  121 ILAGRYSDIL DPQEKFKRIM RGIQGALIVA SILQIVVGFS GLWRNVVRLL SPLSAVPLVA 180
  181 LAGFGLYEHG FPLLAKCIEI GLPEIILLLL FSQYIPHLIR GERQVFHRFA VIFSVVIVWI 240
  241 YAHLLTVGGA YKNTGVNTQT SCRTDRSGLI SGSPWIRVPY PFQWGPPTFH AGEAFAMMAV 300
  301 SFVSLIESTG TYIVVSRFAS ATPPPPSVLS RGVGWQGVGV LLCGLFGAGN GASVSVENAG 360
  361 LLALTRVGSR RVVQISAGFM IFFSILGKFG AIFASIPAPV VAALHCLFFA YVGAGGLSLL 420
  421 QFCNLNSFRT KFILGFSVFM GLSIPQYFNQ YTAVNKYGPV HTHARWFNDM INVPFSSKAF 480
  481 VAGILAFFLD VTMSSKDSAT RKDRGMFWWD RFMSFKSDTR SEEFYSLPFN LNKYFPSV