YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S39AC_MACFA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	368	0.99
Transmembrane Helix	369	390	0.94
Cytoplasmic	391	398	0.86
Transmembrane Helix	399	421	0.90
Non-Cytoplasmic	422	443	0.94
Transmembrane Helix	444	466	0.87
Cytoplasmic	467	498	0.94
Transmembrane Helix	499	517	0.77
Non-Cytoplasmic	518	563	0.56
Transmembrane Helix	564	584	0.92
Cytoplasmic	585	590	0.53
Transmembrane Helix	591	610	0.85
Non-Cytoplasmic	611	626	0.57
Transmembrane Helix	627	648	0.92
Cytoplasmic	649	654	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFQTKLSIS WVPLFLLLSR VFSTETDKPS AQDSRGRGSS GQLADLLQVL SAGDHPPHNH  60
   61 SRSLIKTLLE KTGCPRRRNG MQGDCHLCFE PDALLLIAGG NFEDQLREEV VQRVSLLLLY 120
  121 YIIHQEEICS SKLNMSNKEY KFYLHSLLSL RQDEDSSFLS QNETEDILAF TRQYFDTSQS 180
  181 QCMETKTLQK KSGIVSSEGA NENTLPQLAA TIITLSLQGV CLGQGNLPSP DYFTEYIFSS 240
  241 LNRTHTLRLS ELDQLLNTLW TRSTCIKKDK IHQLQRKQNS IITPDQDYSN FSSSMDEESE 300
  301 DGPISWDQTC FSARQLVEIF LQKSLSPISK EDFKQMSPGI IQQLLSCSCH LPKDQQAKLP 360
  361 PTTLEKYGYS TVAVTLLTLG SMLGTALVLF HSCEENYRLI LQLFVGLAVG TLSGDALLHL 420
  421 IPQVLGLHKQ EAPEFGHFHE SKGHIWKLLG LIGGIHGFFL IEKCFILLVS PNDKKSPEDS 480
  481 QAAEMPIGSM TAPNRKCKVI SLLAIMILVG DSLHNFADGL AIGAAFSSSS ESGVTTTIAI 540
  541 LCHEIPHEMG DFAVLLSSGL SMKTAILMNF ISSLTAFIGL YIGLSVSADP CVQDWIFTVT 600
  601 AGMFLYLSLV EMPPEMTHVQ TQRPWMMFLL QNFGLILGWL SLLLLAIYEQ NIKK