YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GDL18_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMANNCNLVS VLCVILVLTL FHNPITVAGQ NSPVVALFTF GDSNFDAGNK QTLTKTLVAQ  60
   61 GFWPYGKSRD DPNGKFSDGL ITPDFLAKFM KIPLAIAPAL QPNVNVSRGA SFAVEGATLL 120
  121 GAPVESMTLN QQVKKFNQMK AANWNDDFVA KSVFMIYIGA NDYLNFTKNN PTADASAQQA 180
  181 FVTSVTNKLK NDISALYSSG ASKFVIQTLA PLGCLPIVRQ EYNTGMDQCY EKLNDLAKQH 240
  241 NEKIGPMLNE MARNSPASAP FQFTVFDFYN AVLTRTQRNQ NFRFFVTNAS CCGVGSHDAY 300
  301 GCGLPNVHSK LCEYQRSFLF FDGRHNSEKA QEMFAHLLFG ADTNVVQPMN VRELTVYPVD 360
  361 EPMREFWVPP TPATVHASDS SSSTSRGYEY Y

Type	Start	End	Confidence
Signal Peptide	1	29	0.97
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	391	0.99