YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLIP5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.53
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRESTLMEKV TRRTISSFIF FIVSSTILFL AGKSSAKISH NGDNNVTALF LFGDSFLDAG  60
   61 NNNYINTTTL DQANFPPYGQ TFFGLPTGRF SDGRLISDFI AEYANLPLIP PFLEPGNSQK 120
  121 KLYGVNFASA GAGALVETFQ GSVINLRTQL DHYKKVERLW RTNFGKEESK KRISRAVYLI 180
  181 SIGSNDYSSI FLTNQSLPIS MSQHVDIVIG NLTTFIHEIY KIGGRKFGFL NVPDLGCFPA 240
  241 LRILQPKNDD SCLRDASRLA SMHNRALTNL LFQMQRQVKG FKFSLFDMNK SLRLRMQHPS 300
  301 KFGFKEGEEA CCGTGKWRGV FSCGGKRIVK EYQLCENPKD YIFWDSLHLT QNTYNQFANL 360
  361 IWNGGHMSDS LVVGPYNINN LFQIP

Type	Start	End	Confidence
Cytoplasmic	1	13	0.46
Transmembrane Helix	14	32	0.51
Non-Cytoplasmic	33	385	0.98