YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42562713
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAWKSWIVA EKARRCLRTM FFVAAMTASL LASSLPVLIT VADVVVPCLI VSSITCLTCH  60
   61 SPAQHFRQYS FKTSLIDVPL VSLIRSLVII CLSWLCEDTR LAYGLYLETV MLSSFGGILL 120
  121 LLVKTCVFTV NSTLEEAKVY HLKISWGMPV LLLSSAVFGL AHVVVAYRKS CGARRKLMYH 180
  181 KIDQEAVLSC KSGFSGYKKA HRQSFTRSNC KILTFAGEFR QKSFRGTSLD REELLQPRLL 240
  241 ANADSLFIKI QGLYVHYKQR TSPSVSSFVI ISDSAAEMNA RRSRLLDKQM SNLTSQTQNS 300
  301 HFHRSYTIQP DRSSLYDPLL ASHNTTPISL FDKDGVNQIN SIKLGDDMEK DENTGIVLVH 360
  361 GFGGGVFSWR HVMGELSLQL GCRVVAYDRP GWGLTSRLIR KDWEKRNLAN PYKLESQVDL 420
  421 LLSFCSEMGF SSVILVGHDD GGLLALKAAE RMQASTSKHN ITIKGVVLIN VSLSREVVPA 480
  481 FARILLHTSL RKKHLVRPLL RTEITQLVNR RAWCDTTKLT TDITMLYKAP LCLEAWDEAL 540
  541 NEISKLSYEM ILSPQNASAL VKSIGDLPVL VVAGAEDALV PLKSSQVLAS KLTNSRLVEI 600
  601 SGCGHLPHEE CPTTLVSALG SFICRLIPKL PNS

Type	Start	End	Confidence
Cytoplasmic	1	15	0.98
Transmembrane Helix	16	39	0.83
Non-Cytoplasmic	40	43	0.55
Transmembrane Helix	44	63	0.61
Cytoplasmic	64	74	0.56
Transmembrane Helix	75	96	0.86
Non-Cytoplasmic	97	103	0.57
Transmembrane Helix	104	128	0.81
Cytoplasmic	129	143	0.57
Transmembrane Helix	144	166	0.90
Non-Cytoplasmic	167	633	0.73