YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42562707
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYSHQSMGS GSRNARGYEF GRTYVVRPKG KHQATLVWLH GLGDNGSSSS QLMDSLHLPN  60
   61 IKWICPTAPS RPVTSLGGFT CTAWFDVGEI SEDGHDDLEG LDASASHIAN LLSSEPADVK 120
  121 VGIGGFSMGA AISLYSATCY ALGRYGTGHA YPINLQAVVG LSGWLPGWKS LRSKIECSFE 180
  181 AARRAASLPI ILTHGTSDDV VPYRFGEKSA QSLGMAGFRL AMFKPYEGLG HYTVPREMDE 240
  241 VVHWLTTMLG LEGSR

Type	Start	End	Confidence
Cytoplasmic	1	120	0.57
Transmembrane Helix	121	139	0.57
Non-Cytoplasmic	140	149	0.75
Transmembrane Helix	150	168	0.54
Cytoplasmic	169	255	0.56