YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42562670
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	160	0.69
Transmembrane Helix	161	183	0.88
Non-Cytoplasmic	184	204	0.79
Transmembrane Helix	205	226	0.89
Cytoplasmic	227	235	0.66
Transmembrane Helix	236	257	0.79
Non-Cytoplasmic	258	263	0.70
Transmembrane Helix	264	285	0.86
Cytoplasmic	286	305	0.87
Transmembrane Helix	306	328	0.92
Non-Cytoplasmic	329	343	0.80
Transmembrane Helix	344	364	0.80
Cytoplasmic	365	381	0.72
Transmembrane Helix	382	405	0.87
Non-Cytoplasmic	406	414	0.78
Transmembrane Helix	415	438	0.70
Cytoplasmic	439	447	0.55
Transmembrane Helix	448	470	0.91
Non-Cytoplasmic	471	475	0.50
Transmembrane Helix	476	498	0.86
Cytoplasmic	499	509	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTQIFQET LYTFSLVISV LKFDELGLEI ARIALPAALA LTADPIASLV DTAFIGQIGP  60
   61 VELAAVGVSI ALFNQVSRIA IFPLVSITTS FVAEEDACSS QQDTVRDHKE CIEIGINNPT 120
  121 EETIELIPEK HKDSLSDEFK TSSSIFSISK PPAKKRNIPS ASSALIIGGV LGLFQAVFLI 180
  181 SAAKPLLSFM GVKHDSPMMR PSQRYLSLRS LGAPAVLLSL AAQGVFRGFK DTTTPLFATV 240
  241 IGDVTNIILD PIFIFVFRLG VTGAATAHVI SQYLMCGILL WKLMGQVDIF NMSTKHLQFC 300
  301 RFMKNGFLLL MRVIAVTFCV TLSASLAARE GSTSMAAFQV CLQVWLATSL LADGYAVAGQ 360
  361 AILASAFAKK DYKRAAATAS RVLQLGLVLG FVLAVILGAG LHFGARVFTK DDKVLHLISI 420
  421 GLPFVAGTQP INALAFVFDG VNFGASDFGY AAASLVMVAI VSILCLLFLS STHGFIGLWF 480
  481 GLTIYMSLRA AVGFWRIGTG TGPWSFLRS