YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42562656
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSTSKIKSV DFYRKIPRDL TEASLSGAGL SIVAALAMLF LFGMELSSYL AINTSTSVIV  60
   61 DKSSDGDFLN IDFNISFPAL SCEFASVDVS DVFGTHRLNI SKTIRKVPID PHLRATAEEF 120
  121 HSTSDLHLIN HGDEDHGDNS TYADIPLTGA AFEKFTHHFQ ILVVNFYAPW CYWSNRLKPS 180
  181 WVKASQITRE RYNPGTDDRV LLGSVDCTEE PTLCKSNHIQ GYPSIRIFRR GSGLREDHGN 240
  241 HEHESYYGDR DTDSLVKMVE ELLKPIKKED HKLALDGKSD NAASTFKKAP VSGGCRIEGY 300
  301 VRAKKVPGEL VISAHSGAHS FDASQMNMSH IVTHLTFGTM VSERLWTDMK RLLPYLGQSY 360
  361 DRLNGKSFIN ERQLDANVTI EHYLQIIKTE VISRRSGQEH SLIEEYEYTA HSSVARSYHY 420
  421 PEAKFHFELS PMQVLISENP KSFSHFITNV CAIIGGVFTV AGILDSIFQN TVRMVKKIEL 480
  481 GKNI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	44	0.86
Non-Cytoplasmic	45	444	0.96
Transmembrane Helix	445	468	0.85
Cytoplasmic	469	484	0.87